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The brewing process is the same for any all grain batch up until the first wort and sparge runnings are collected into the boil kettle. The temperatures that a typical mash out/sparge reach should be enough to pasteurize the wort <ref name="pasteurization">[http://science.howstuffworks.com/life/cellular-microscopic/pasteurization4.htm Heat pasteurization]</ref>, however we advise heating the wort for a short (1-2 minutes) boil in order to kill a greater degree (2-3 logs more) of thermotolerant microbes <ref name="Heit_boiling">[https://www.facebook.com/groups/MilkTheFunk/permalink/1180630378631841/?comment_id=1180634488631430&reply_comment_id=1180677581960454&comment_tracking=%7B%22tn%22%3A%22R2%22%7D Conversation with Bryan of Sui Generis Blog regarding boiling versus lower temperature pasteurization. 11/18/2015.]</ref><ref>[http://sourbeerblog.com/lactobacillus-2-0-advanced-techniques-for-fast-souring-beer/ ''Lactobacillus'' 2.0 – Advanced Techniques for Fast Souring Beer. 11/18/2015. Retrieved 11/19/2015.]</ref>. Once all of the wort is collected in the boil kettle (and preferably brought to a boil), the wort is chilled to around 80-120°F (37-48°C), depending on the ''[[Lactobacillus]]'' culture that is being used. Once chilled to the temperature that is appropriate, the wort in the kettle is inoculated with a culture of ''Lactobacillus''. Hops should not be added at any point before inoculating the wort with a culture of ''Lactobacillus''; most species of ''Lactobacillus'' will be inhibited by the presence of hops.
There are various ways of inoculating the wort. A reliable method is pitching a pure culture of ''Lactobacillus'', or a blend of ''Lactobacillus'' cultures. Alternatively, a handful of unmilled malted barley can be added to the kettle for inoculation instead of a pure culture, since the husks of grain carry many microorganisms. If unmilled grain is added, it is thought that filling the head space of the kettle with CO2 will help decrease off-flavors such as rancid cheese from [[Butyric Acid]] and/or [[Isovaleric Acid]], which are produced by microbes that are naturally present on the grain. Keeping the temperature between 113-120°F (45-48.8°C) will encourage the ''Lactobacillus'' resident on the grain and will discourage other bacteria. Lowering the pH of the [[Sour_Worting#How_to_Pre-Acidify|wort to under 4.5]] will also discourage many other bacteria from thriving in the wort during the incubation period. Consider [[Alternative Bacteria Sources]] for more reliable approaches to using "wild" ''Lactobacillus'', or ''Lactobacillus'' from sources other than yeast labs.
If a pure culture of ''Lactobacillus'' bacteria is used it is ideal but not necessary to fill the head space of the fermenter with CO2 gas (some brewers have reported that this will help reduce sulfur in the finished beer). Keeping positive pressure in the kettle with CO2 will help prevent contaminates that create [[Butyric Acid|butyric acid]] and other off-flavors from entering the kettle due to negative pressure, and is often the approach that commercial brewers take <ref>Personal correspondence with Steph Cope of CraftHaus Brewing Co. 02/06/2016.</ref>. The kettle should be held at the desired temperature for 24-72 hours (in some cases longer, but no longer than 5 days). Depending on the strain of ''Lactobacillus'', and the desired sour level, the time of incubation is ultimately a variable that is up to the brewer (see the ''[[Lactobacillus]]'' page for suggested temperatures and times for specific strains). The kettle lid should be firmly in place and optionally sealed with plastic wrap so that other microorganisms do not get in. Potential for formation of [[Butyric Acid]] and [[Isovaleric Acid]] when using only a pure culture is extremely slight to none assuming no other microbes are allowed inside the kettle.